In my experience, I got the same story initially from the dealer when my airbag light started flashing. The whole we'll diagnose the car, there is a potential charge if it is not under warranty. I was initially perturbed by the whole "not under warranty talk" but I knew it was covered so I signed off confidently. I wouldn't move it, who is to stop them from putting in the computer that it is not a warrantied issue and later have another dealer give you a hard time. Ask yourself if you did anything wrong, abuse etc if not then stay confident the warranty will cover it and you can look at the dealer later and say "I told you so."
Dealerships will grill you for potential reasons to put it on you. Just stick to the facts that you put in your post and you'll be fine, I hope its a quick fix. Remember to void the warranty a dealer must show that your direct actions caused the issue. If your car isn't modded and you don't drive like an *** it'll be ok.
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2009 Carbon Fiber/Red 370z aka Trish: Sports Package, Meisterschaft full catback, Fast Intentions Longtube Headers, Injen Long Tube Intakes, UpRev Tune: Sold 
2008 Lotus Exige S Club Racer aka Bella, always leaves me smiling
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