The paint on these cars is just terrible. In all honesty, the paint on my 2003 Mustang GT was at least 10x better quality than this crap. My sister has a 2002 Mustang with around 120k on it and the paint on that car is in better shape than mine!
Maybe you'll get lucky and they'll pay to have it repainted... but then you have to cross your fingers that you are getting a quality job done.