Auto up should work on both sides, if the position is reset properly. That's actually how you tell if you've done the procedure right (after e.g. disconnecting the battery) - after you're done, auto up works if you completed it successfully, and doesn't if you didn't.
Give the other statements you've made, I wouldn't be surprised if your battery is weak/dying or you have some other electrical issue going on. You might want to get that checked out at some point as well.
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