Not cool. If it's the shop I think you're talking about, that's definitely bad karma on their part. It's not.... erm, .D.A.R is it? If they haven't already, they need to step up and fix this. That's clearly an installation error. God knows you're not the first one to have the Gen 3 installed there. It's been covered numerous times since they first came out and is clearly noted in the Stillen installation instructions.
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[09][MB][6-Spd MT][Touring][Stillen Gen III][K&N][Borla CBE][Evo-R]
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