If the system is installed right and properly theer should be no electrical problems at all. That being said dealers and all do not like you taking the new cars system out and p0utting your own in. So if there is a problem with the starter "just saying" they might not pay for it because you put in the stereo. But I have told people to argue that the audio system will not effect anything the engine has to deal with and they have gotten whatever fixed for free. I know some dealers will look at how the wiring was done if it was done right than they are more likely to help you out.
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